The main threat facing the Southeastern
beach mouse is continued development
along beaches. Development along
beaches can cause destruction or degradation to sand dunes limiting areas of habitat for the beach mouse, and
increasing fragmentation, leading to isolation of populations. Increased traffic on sand dunes is also a threat for the beach mouse, as the increased traffic damages vegetation on dunes that the beach mice depend on for food and shelter. Hurricanes also pose a risk to the beach mouse as they can cause damage and destruction to their sand dune habitat.